CDS

Accession Number TCMCG007C24200
gbkey CDS
Protein Id XP_033144495.1
Location join(29544194..29544262,29544508..29544633,29544988..29545145,29545293..29545337,29545557..29545635,29545727..29545800,29545974..29546080,29546168..29546341,29546538..29546741,29546841..29547039,29547116..29547190,29547274..29547587,29547879..29548065,29548151..29548391,29548493..29548832,29549048..29549228,29549311..29549451,29549549..29549798,29549890..29550327,29550423..29550883,29550964..29551100,29551188..29551369,29551442..29551828,29552008..29552133,29552393..29552458,29552543..29554278,29554354..29554645,29554809..29555033,29555183..29555716,29555805..29555937,29556027..29556289)
Gene LOC103862024
GeneID 103862024
Organism Brassica rapa

Protein

Length 2647aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_033288604.1
Definition U3 small nucleolar RNA-associated protein 20 isoform X1 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category V
Description Down-regulated in metastasis
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K14772        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs -

Sequence

CDS:  
ATGGCGACCCCAGCTGATGCTCGGGCAGTCAAGTCGCTCAACACTTCCGGGGGACGTAAGAAATTCGTGTTCAAGAATCTCGCTCAGAAAGTCAATGAGATTGACATCAGCGGTTTCTTTAAGAGCCTGGAGAAGGTTAAACCTGAGCCTTCAGAGGGTTCTTCGTTTTTCAGAGACTGTCTCGTTGAATTGAGGGAACTGAATACAGCAGAAGATTTCATTTCGTTTTATGAAGAAATGTTGCCATTTGTTCAGACTTTGCCTTTGGTCATTGAGCAAAAAGAAATAATCTTCACCAAGCTTGTCTCTCGATTACAAATGGACGCAAGATTGTCCCTGGACGCCATTCTCAGGTTGATTGCTGCTTTATCAAGAGATCTCTTGGAGGACTTTATCCCCTTCCTTCCACGGATCGTGAACTCCTTAGTGGCACTCCTAGAAAATGGTGCCAAGAAAGACGCGGATATTATCAAGCAGATATTCTCTTCATGGTGCGAGATATTAATGAATCTGCAGAAGTATCTCGTACGCGACATCGAAGGTATTCTCAGGGATACGTTGGACTTGAGGTATCATCCTAAAGACTATATCAATGAATTAATGTCAGAGTCTATGTCCTTTTTGTTGAGGAATGCGCGGAATGAGCAACTTGAAAAAGGGATCAACAGGATCCTTTCCGAAGTTGCAGATCCAGCCAAACAAGATGGAGCAGTTGATTTACTTTATTATGCTATGAGAGGAACCTCTGGAAGTCTCCACTCAAAAGCCGGGAGAGTTTTGAGTTTCTTGCTGAAAGATTCAACATTATCTTTTTGTGATAATTCTCCTCAAGGCCCTGGTACAGTCGTGGAAGTTGTTAGTTCCACTTTGGAGAGATTATGCGAGGATTTGGAAGCAGACAAATTAAATGTTATGTGGAAATGCTTGATTCAAGAAATAAACGAATCGATCAAAAACAAAAACACAATTCATTTAAGCCGACTGTTGAGTGTGCTTACTGCATCTGTTAGAGTTCAGAAAGGTCTCAAGGTTCATGATTACCCATCTTTGATTCGACTTGTGGGCCTCACTGTCTCAACTTTTGTGGCTTCCTCTGAGACCGTTGTAGAAGGGGATAACTTATCTGCTGTCATTGATGAAGTTCTACAACTGATGTTATGCACAATAAACAGAGTCACTGATTTGGAAACTGTTGCTTCGCAATGGGCTCCCATTTTTGCCATGAAGAGTTCAAGTTTGCTGACTTTTTTGGAGGAGTTGTTGAACAAGGATCAATCCGTAGTGAAAGCCTTTACAAACAATATATTAAGTGCAATTAACAATATGATTTGGGAGTCTCCTGAGGAAGTTATTCCTCTGTTACTGACATTTTGCGAGAACCAACAAACAAGTCACGACAGAGTGATCATCGTAGATCAAACATTTGAGAGAATTCATAAGTTTTTGGAAGAAAAGATTAAGAAGGTTCGGCAGAATGTAGAGAACACTGGATTATCTCAAGCTGATGATGCCGAGTTGGCTGCCATCTGGGGAGTTGTCAACTGTTATCCTTATTTCAAAGTGGATCCATCATTACTGATTTCCTTTAAGGATACTCTCAGACAGTATTTGACAGTGTCGGATGCAAACACGTTTAGTACCCCAGAATTGAAGTGGCAGAGCTTACTTGGTGCTGCTTTAAGTTCATGTCACAAACTGCCGAGAAGAATCAACCACAACGATATAGAGGAAGCGTTGTCTATGGCAAAAGATTACAAGTCATGCGTACAAGTGTTGACCCCCGTGGCCGATTTTTTGGACTCAATGCACAGGCTTGCATTAGCTAATGATGACAGTTCTAAGCCGCAACCAGAACTTCAAGAAGAAAAGGCTAAAGATGCTTTTGGCATATTTTCGGAAAATCTGCGCCACCCAAACAAATGCATCCGTCTTATGACGCTGAGGATTTTGTGCCATTTTGAGACATTTTCGTCCGACTCGTCTTTTGAAGAGCATCCTCCCAAGAAGAAAATGAAAACTGAGGAGACCAAAAAACCCCTTCATAAAAGGAATGTTCTTGAGTTATTACGCTCAATCCAAGAGATTGTTCCCACAGTGAATACGGAGGGGGAGTTGATCAGTATGATTCATGAAATAAAAAGGAATCTCTCTGCTGGCTTGGTACATGCGGCATATGTGCAGCTAGTATTGAATGGGCTGATGGGAATATTTCATATTAGTTATACTAAGCTGTGGGGTCCAGCATCTGAGTGTCTTGAGGTTCTTCTGAGGAATCACACAGTAGCTGTGTGGAGTGATTTTGTTTGCTATTTGGACCAGTGCCAGCTAAAATCTGAGAAACTCGACAATCATAGTGAGAATCCGAACCACAACTTGTCAGAGAGGCCTACCGATCTGATTGGCCGTTTTAATTTATTTCTCTATCCGCCGTCTAATAGCACAGCTACTGCAACGGTGGCTACGCAGTTGCTCCAGACCTTGCAGAAAGCTCCCAAAGTTGCTCAGTCCCGTGCTTCTGAGATTCTCCCTCGGTTGCTGAAGTTTCTGGGATACAACATTGAAAATCCTACGAGTGTCGGATTGTTCAATGCCCCAGTTTGTAAAGGAGATGACTGGAGGAATGTTCTTAAACAGTGGTTGACTTTGCTGAAATTGATGAAAAATCCTAAGTCGTTTCAGTTTAGCGAATTTCTAAACAACGTTCTGCAGAATAGATTCCTGGACGATAATGATACTGAACTACAAACCATTGTTCTAGAGTGCCTTCTGTTGTCGAACGACTTCTTACTCCCACACCGCGAGCATTTGTTGAAACTGATCAAACCAGAGGAATTAAGAGAAGAACTCACAACCTCGAACATGTCCGTAGACATTGAAGAAGCTCACAGATCTCTTCTTTTCTCTCTTGAAATTCGAATCCTTGCGCCAAAAGTCAGGACATTAAAGAATTTGGCTTCACGGAAGCATACAAGTATAAATCATAGGAAGGCAGTTCTTCGCTTTATAGCTGAGCGGGATGTTAACGACCTTGCCCTCTTCTTTGTATTGTTGATAAAGCCTTTGAACATCATATCAGAGGAAACAATGGACTTGTTCTGGAGTTCAGGCAAAAGTTCGCTGGATTATTTCCAAAAGGCGGATTTCTTAAAGGATTTCACTGGTGATACTATTTCTACATTATCCAAGAATCAGAAATCTGGGTTTCTTCATGTCATCCAAGACATCCTTGAAGTCTTTGATGAGCTCCGTGTCCGACCTTTTATAGACTTTTTGATGGGATGTGTTGTCCGGCTAATGGTAAACTATGAAGAAAGAAACACTGAATCATTGACACCAAGAAATGACACTGCCGCCTCATCAACACCAGACAATAAACAGAATGTTTCAGTTCATCAAGACCAGGCTGGCACTGCTTTGAAGCAGTTTAAAGAGTTGAGATCCTTGTGTCTGAAAATTATTGCTCATGTTCTTGATAAATACGAGGATTCTGATCTTGGTTCCGAGTTCTGGAACCTCTTCTTTTCGGCAGTAAATCCGTTAATCAAGAATTTCAAGCAGGAGGGTTCTAGTAGTGAGAAAACAAGTTCCTTGTTCTCATGCTTCTTGTCAATGAGCAGAAACCGCAATCTCGTGACCCTCTTATGTCGGGAAGAGTCTCTTATTCCAGACATTTGTTCGATTCTGACAGTCACCACAGCTTCAGACGCTATAAAGTCGTCTGCACTGAAGTTCATAGAGAATCTGCTTTGTCTTGACAGTGAGTTGCATGAGGATGACAGTATGATCAAAGGCTTCTTAGATCCGTACGTAGAAACACTGTTCAGCAGCTTGCATTCTCTTTTCATCGGGGATATTAACAAAAGGAAATCAGTCAAGTATCATGGGGAAAGAGAGGTTAGGATTCTTAAATTGTTGTCAAAGCACATGGGAGATCAGTCTTGTGCTATGAAGTATTTGGAAGTCTTACTTTCTTTCTTGGATAAAAACGTGAAAGATTCTGATATCCGTCGTGAAGCTTTACTAGCTATTCAGGACATCATATCGTTGCTTGGGACTGAGAGTGTCACCAAAATTATAAACAAAGTCTCTCCTCTACTTGTTGACGCTGAAGTTGACGTTAGATTGTGCATTTGTGATCTTCTTGAATCTCTTGCAAAAATCGACTTTTCTCTGGATGATGTGGCAAAGCGCATCCGAGATATGAATTCCATCTCAGCCATGGAAGTTGATGACCTTGACTATGAAAGGATAGTTAATGCTTATGTGGAGATTGACTCGGATTTCTTTGCTAAATCCTCGAAGCAGCACACGATGATTATACTGTCACAAAGTTTATACAACTTATCATCGGAATCCATTATGATAAGGGGAAGCGCACATAAGCTCTTGTCATCTTTCATTGAATTTTCGGCCTCAATACTATGCCAAGAAGCTTCAGCTCACTCTGGCGTTGGCAAAGAGGTCAAAATAGCTGATGCAAGCTGGACAGGAAAGCATACACTGTCCATTGTTGATTTTATCTTGAAACACATTGCTGATGCAATAAACAGAGGAGGCAATATAGTGAAGGAGTGGATTCTTTTGATACGTGAAATGGTGACAAAACTCCCAGATGCTGGAAATCTTGGTGCATTTAGACCTTTATGCTCTGAAGATGAGAATCTTGATTTTTTTAAATCTATTATTCACATTCAGTCACACCGTAGATCAAAGGCGATTTCACGCTTCGCAAAACTGGTCGGAGATAGCAGCCTGCCTGAGGGAGTCTTGAGAAAACTGTTTGTCGCAGTCTTTTTCCACATGTTGCTCGATGGACAAGATGTAAACGAAAAAGAGAACAATGTCCGTAATGCATGCACAGAGGCCCTTGCATCTGTATCTGCACATATGAGTTGGAAGTCGTACTATGCTCTATTGAATCGGTGTTTCCGTGAGATGCACAATCATACCAAAAAGGGAAAGCTTCTGCTGCGGCTTATCTGCTTGATTTTGGATAAATTTCATTTTACAGAAGATGGTGGTTACAGGCAAGAGGAGATTGAGGGGATTCATAAAAGCCTTCAAACTGTGTTTGGAAAGATGCAGAAGCTGATGGATTCTGAGTCTGATAATGTTAATGTTAACAGCAGTGTAGCTGCGCTGAAGGTTCTAAAGCTGCTCCCCAAAGACGTAATGGACGATTATCTGTCCCCTATAATTAAGAGGATTGCCACTTTTACGAAGAACCGGTTGGAGAGCACACGTGATGAAGCCAGATCTGCTCTGGTTGCTTGTTTGAAGGAATTGGGGCTCGAGTACTTGCAGGTTGTCATCAAAAGTTTACGTGATATCCTGAAACGAGGATCTGAGTTGCATGTGCTGGGATACACCGTCCATTCTATCTTATCGAAGTGCTTGTCCAAACCTACGTGTGGGAAGTTGGATCATTGTTTGGATGATCTCCTTGCTGTGGTGGAAAACGACATCTTTGGCGAGGTTGCTGAACAGAAAGATGTGGACAAATTCAAATCCAAAATGAAAGAGACAAGAAAACGCATGTCATTCGAGAGTCTGAAGTTGATTTGTGAAAATGTGACGTTCAGAGAGCATGCATTGAAACTACTTTCCCCGGTCACTTCTCAGCTGAGGCGGCATCTAACTCCAAAGATAAAATCAAATCTGGAGAAAATGTTACAACAAATTGCAGTTGGTATTGAAGGCAATCCATCTGTTGACCAAGTAGATCTGTTTGTTTTTATATATGGCCGCGTTGATGACGGTATTAACAACAGGAATGGTCCTGGAGATCAAGGGTCTTCTCCGCCATCCCAAAAGAAAGGGAAATCAAGAGATCGACAAGAGACTGGTGGGTTGATTTCTGGTACTAGGTCTTGTCCACATCTTATAACTGTGTTTGCTCTGGACTTGCTGCAAAACCGACTGAAGAAAATTAAACTCGACAACACTGATAAACAGCTGCTGGGGAAGTTGGATTCGTTTGTCAAACTACTTACCGAATGCTTGCGTTCTAAGTATGAAGAGATTGTGTCATCAGCCCTTAGATGTTTCACTTCATTAATATGGTTTCCACTGCCTTCCCTCATCTCTGAAGCAGATGAGTTGAAAACAGCATTGTTAACAATAGCTCAGTCTGCAGTGAATTCCAGCAGTCCTGTTGTGCAGTCATGCCTTAAGCTATTAACAACGCTTCTCGGTAATAAAAACATTACTTTGTCTCCGGAGCAGCTAAAGTTGGTGATTCAGTTCCCCATGTTTGTTGATCTGGAGTCCGATCCATCCTTTGTTAACCTTTCACTACTCAAGGCCATTGTGAAACGAAACCTTGTGGTTCCAGAGATTTATGACGTTGCAGTTCAGGTTTCAGAGTTGTTGGTAAAAAGTCAGCAGGAATCAATCCGCAAGAAATGCAAACAGATACTGTTACAGTTTTTGGTCCACTACACACTTTCTGAGAAACGTTTACAGCAACATGTGGAATTTCTGCTGCAAAATCTGAAGTATGAACATCCAACTGGAAGAGAAGCAGTCCTTGACATGCTTCATACTCTAATCTTGAAATTCTCAGTACCAAATCTCGGCAAGAAGTCATTTCTTGACCAACAGTCGAAAACAATGTTCATTCAGCTTGCTATGTGTTTGGGCAATGATATTGATCAAAAAGTCCTGCCCCGGATCGGTTCTGTGATAGAACTTCTGATAGGGTGCATCAGTGAAGATCAAGTTGGTACCATTCTATCGTATTGTCTGTGTTGGTATAAGCAGCAAAGGTTACAGGCTGTGGCAGCACAGGTGTTGGGATTTATTATTGACTCCATGGAGAAATCATTTCGGAAGCATATCCACAATACATTGGAGGATGCCAAAGTGATAATGAAGTCTGCTGTCAGTGCTTCCAGCCTGCATAATGCCGAGGAAGGTGTTATTCCGTTCTGGAAGGAAGCATACTACTCACTCGTTATGATAGAGAAGATGGTCCGGCAATTTCCTGATTTAAAACTCAAAGAAGATTTAGAGGATATATGGAAAATGGTATTTAAGTTCTTGTTGTACCCACACGCATGGTTGCGAAGTATATCACGCCGGCTACTGAATTATTATTTCAAGGCATTGGCTAGGAGGAAAAGAGCAGAATCTCAGACAGTAGTATCTGATTCTCTTCTTGAGAACCCAAGTAGCCTGTTCTCGGTTGCTGTTTCTCTTTGCTCCCAGTTAAAGGAGCTACCCACCACAGGAGATGTTAACGTCGATCTCCTCGTAGAAAATATTGTTTTCGCGGTCTCGAGTCTTCATTCCCTGATTGGACATTCTGTTCAAGCAAAAGACAATGGGTTCTGGTCCGGTCTTGGCGAGGATGAGCAAGTGGTGTTCCTAAAAGCCTTTGAAGTGCTTGATTCAGGGAAAGGAAGGTCTACTTTTCTGTCTCTTACCTCAGGCAAACGTACTGAGAACGGCGAGGAGGATGATGCTGCGAGTGGTGTAAGGAATGTATTGATTGGAAGCTTGCTCAAGAGGCTCGGGAAGGTTGCTCTTGATACGGAGTCTGTTCAGATGAAGATTGTGTTCAACGTCTACAAAGCATTCACCTCACAGATGAATCAAGATGACTGTCGTTTATATGCCTTCAAAATTCTGCTTCCATTGTACAAAGTCTGTGAAGGTTTCACAGGAAAGATCATCTCAGATGAGTCTAAACAACTAGCAGAGGAGGTACGTGACAGTATAAGAGACAAGACATTAGGCAACCAACTCTTTGTGGAGGTGTACAGTGAGATAAGGAAAAGCTTGAGAAACAAGAGGGAGAAGAGAAAGAGAGAAGAAAAGACAATGGCAGTGGTGAATCCAGAGAGAAATGCAAAGAGGAAACTGAGGTTAGCTTCAAAGAACAAAGCCAACAAGAGGAGGAGGATGACTAGCATGAAGTTATCTAGATGGGCTCGCTCTTGA
Protein:  
MATPADARAVKSLNTSGGRKKFVFKNLAQKVNEIDISGFFKSLEKVKPEPSEGSSFFRDCLVELRELNTAEDFISFYEEMLPFVQTLPLVIEQKEIIFTKLVSRLQMDARLSLDAILRLIAALSRDLLEDFIPFLPRIVNSLVALLENGAKKDADIIKQIFSSWCEILMNLQKYLVRDIEGILRDTLDLRYHPKDYINELMSESMSFLLRNARNEQLEKGINRILSEVADPAKQDGAVDLLYYAMRGTSGSLHSKAGRVLSFLLKDSTLSFCDNSPQGPGTVVEVVSSTLERLCEDLEADKLNVMWKCLIQEINESIKNKNTIHLSRLLSVLTASVRVQKGLKVHDYPSLIRLVGLTVSTFVASSETVVEGDNLSAVIDEVLQLMLCTINRVTDLETVASQWAPIFAMKSSSLLTFLEELLNKDQSVVKAFTNNILSAINNMIWESPEEVIPLLLTFCENQQTSHDRVIIVDQTFERIHKFLEEKIKKVRQNVENTGLSQADDAELAAIWGVVNCYPYFKVDPSLLISFKDTLRQYLTVSDANTFSTPELKWQSLLGAALSSCHKLPRRINHNDIEEALSMAKDYKSCVQVLTPVADFLDSMHRLALANDDSSKPQPELQEEKAKDAFGIFSENLRHPNKCIRLMTLRILCHFETFSSDSSFEEHPPKKKMKTEETKKPLHKRNVLELLRSIQEIVPTVNTEGELISMIHEIKRNLSAGLVHAAYVQLVLNGLMGIFHISYTKLWGPASECLEVLLRNHTVAVWSDFVCYLDQCQLKSEKLDNHSENPNHNLSERPTDLIGRFNLFLYPPSNSTATATVATQLLQTLQKAPKVAQSRASEILPRLLKFLGYNIENPTSVGLFNAPVCKGDDWRNVLKQWLTLLKLMKNPKSFQFSEFLNNVLQNRFLDDNDTELQTIVLECLLLSNDFLLPHREHLLKLIKPEELREELTTSNMSVDIEEAHRSLLFSLEIRILAPKVRTLKNLASRKHTSINHRKAVLRFIAERDVNDLALFFVLLIKPLNIISEETMDLFWSSGKSSLDYFQKADFLKDFTGDTISTLSKNQKSGFLHVIQDILEVFDELRVRPFIDFLMGCVVRLMVNYEERNTESLTPRNDTAASSTPDNKQNVSVHQDQAGTALKQFKELRSLCLKIIAHVLDKYEDSDLGSEFWNLFFSAVNPLIKNFKQEGSSSEKTSSLFSCFLSMSRNRNLVTLLCREESLIPDICSILTVTTASDAIKSSALKFIENLLCLDSELHEDDSMIKGFLDPYVETLFSSLHSLFIGDINKRKSVKYHGEREVRILKLLSKHMGDQSCAMKYLEVLLSFLDKNVKDSDIRREALLAIQDIISLLGTESVTKIINKVSPLLVDAEVDVRLCICDLLESLAKIDFSLDDVAKRIRDMNSISAMEVDDLDYERIVNAYVEIDSDFFAKSSKQHTMIILSQSLYNLSSESIMIRGSAHKLLSSFIEFSASILCQEASAHSGVGKEVKIADASWTGKHTLSIVDFILKHIADAINRGGNIVKEWILLIREMVTKLPDAGNLGAFRPLCSEDENLDFFKSIIHIQSHRRSKAISRFAKLVGDSSLPEGVLRKLFVAVFFHMLLDGQDVNEKENNVRNACTEALASVSAHMSWKSYYALLNRCFREMHNHTKKGKLLLRLICLILDKFHFTEDGGYRQEEIEGIHKSLQTVFGKMQKLMDSESDNVNVNSSVAALKVLKLLPKDVMDDYLSPIIKRIATFTKNRLESTRDEARSALVACLKELGLEYLQVVIKSLRDILKRGSELHVLGYTVHSILSKCLSKPTCGKLDHCLDDLLAVVENDIFGEVAEQKDVDKFKSKMKETRKRMSFESLKLICENVTFREHALKLLSPVTSQLRRHLTPKIKSNLEKMLQQIAVGIEGNPSVDQVDLFVFIYGRVDDGINNRNGPGDQGSSPPSQKKGKSRDRQETGGLISGTRSCPHLITVFALDLLQNRLKKIKLDNTDKQLLGKLDSFVKLLTECLRSKYEEIVSSALRCFTSLIWFPLPSLISEADELKTALLTIAQSAVNSSSPVVQSCLKLLTTLLGNKNITLSPEQLKLVIQFPMFVDLESDPSFVNLSLLKAIVKRNLVVPEIYDVAVQVSELLVKSQQESIRKKCKQILLQFLVHYTLSEKRLQQHVEFLLQNLKYEHPTGREAVLDMLHTLILKFSVPNLGKKSFLDQQSKTMFIQLAMCLGNDIDQKVLPRIGSVIELLIGCISEDQVGTILSYCLCWYKQQRLQAVAAQVLGFIIDSMEKSFRKHIHNTLEDAKVIMKSAVSASSLHNAEEGVIPFWKEAYYSLVMIEKMVRQFPDLKLKEDLEDIWKMVFKFLLYPHAWLRSISRRLLNYYFKALARRKRAESQTVVSDSLLENPSSLFSVAVSLCSQLKELPTTGDVNVDLLVENIVFAVSSLHSLIGHSVQAKDNGFWSGLGEDEQVVFLKAFEVLDSGKGRSTFLSLTSGKRTENGEEDDAASGVRNVLIGSLLKRLGKVALDTESVQMKIVFNVYKAFTSQMNQDDCRLYAFKILLPLYKVCEGFTGKIISDESKQLAEEVRDSIRDKTLGNQLFVEVYSEIRKSLRNKREKRKREEKTMAVVNPERNAKRKLRLASKNKANKRRRMTSMKLSRWARS